cache_ensembl 1.0 Free download

cache_ensembl 1.0

  • Publisher:Leo Goodstadt
  • Version:1.0
  • Operation System:-
  • License:MIT/X Consortium Lic...
  • File Size:-
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Total Downloads:218

cache_ensembl 1.0Description

Fast Ensembl data cache
cache_ensembl is a Python module giving fastest access to gene information in GTF format.We want to access GTF format gene structure data with the maximum speed and with the minimum of fuss.The data can cached in binary format and re-read efficiently.Currently times to load the complete data set for Ensembl release 56 gene models are: Homo sapiens 139.0 Mb 9s Canis familiaris 52.0 Mb 3s Homo sapiens is the largest GTF file available from Ensembl.The numbers are for a duo core (the code is single threaded) computer with a SATA 7200rpm hard drives. Requirements:
· Python

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